If you rely on “GitHub Desktop” for managing repositories visually, running into the “Open with GitHub Desktop not working” issue can be frustrating. This problem usually appears when you try to open a repository from a browser using the “Open with GitHub Desktop” button, but nothing happens, or the app fails to launch correctly.
This issue is fairly common on “Windows 11”, especially after updates, misconfigured system defaults, or broken protocol handlers.
This guide walks you through detailed solutions to resolve the issue and restore full functionality.
GitHub Desktop Not Opening on Windows 11 [Fix]

Step 1: Restart GitHub Desktop and Your System
The first and simplest fix is restarting both the application and your system. Sometimes, background processes get stuck, preventing “GitHub Desktop” from responding to external commands like “Open with GitHub Desktop”.
Close GitHub Desktop completely. Make sure it is not running in the background by opening “Task Manager” using Ctrl + Shift + Esc. Look for any process named “GitHub Desktop” and end it manually.
Once you have confirmed it is closed, restart your computer. This clears temporary glitches, resets system services, and ensures all protocol handlers reload correctly.
After restarting, open your browser and try clicking “Open with GitHub Desktop” again. If the issue was caused by a temporary system conflict, this should resolve it immediately.
Step 2: Reinstall GitHub Desktop Properly
If restarting does not help, the next step is to reinstall the application. A corrupted installation is one of the most common reasons why “Open with GitHub Desktop” stops working.
Start by uninstalling GitHub Desktop from your system. Go to “Settings”, then “Apps”, then “Installed Apps”. Find “GitHub Desktop” and click uninstall.
After uninstalling, navigate to the installation directory, usually located in the “AppData” folder. Delete any remaining files related to GitHub Desktop. This ensures no corrupted data remains.
Now download the latest version from the official website and install it fresh. During installation, make sure there are no interruptions.
Once installed, open GitHub Desktop manually first. This step is important because it allows the app to register system protocols correctly. After that, try using “Open with GitHub Desktop” again from your browser.
Step 3: Set GitHub Desktop as the Default Application for GitHub Links
The “Open with GitHub Desktop” feature depends on a specific “URL protocol handler” called “x-github-client”. If this handler is not correctly assigned, Windows will not know which application to launch.
Open “Settings” and go to “Apps”, then “Default Apps”. Scroll down and click on “Choose defaults by link type”.
Look for “x-github-client” in the list. If it is not assigned to GitHub Desktop, click on it and select GitHub Desktop manually.
This step ensures that whenever your browser sends a command using this protocol, Windows routes it correctly to GitHub Desktop.
After making this change, restart your browser and test the feature again.
Step 4: Check Browser Permissions and Extensions
Sometimes, the issue is not with GitHub Desktop but with your browser. Browsers like Chrome or Edge may block external applications from opening due to security settings or extensions.
Open your browser settings and check if there is any permission blocking external protocol requests. For example, Chrome may show a prompt asking if you want to allow GitHub Desktop to open. If you previously denied this, the browser may silently block it.
Reset these permissions or clear browsing data to remove stored restrictions.
Also, disable browser extensions temporarily. Some extensions, especially privacy or security tools, can interfere with external application calls.
After disabling extensions, try the “Open with GitHub Desktop” button again. If it works, you can re-enable extensions one by one to identify the problematic one.
Step 5: Ensure GitHub Desktop is Updated
Running an outdated version of GitHub Desktop can cause compatibility issues with modern browsers or Windows 11 updates.
Open GitHub Desktop manually and check for updates. Go to the menu and click on “Check for Updates”. If an update is available, install it immediately.
Updates often include bug fixes related to protocol handling and integration with browsers.
After updating, restart the application and your browser, then test the feature again.
Step 6: Reset Windows App Associations
If the problem persists, your system’s app associations might be corrupted. Resetting them can restore normal functionality.
Go to “Settings”, then “Apps”, then “Default Apps”. Scroll down and click “Reset all default apps”.
This action restores all associations to Microsoft-recommended defaults. After resetting, you will need to manually set GitHub Desktop again for “x-github-client” as described earlier.
This step is especially useful if multiple applications or updates have altered system behavior.
Step 7: Check Firewall and Security Software
Security software can sometimes block communication between your browser and GitHub Desktop. This can prevent the “Open with GitHub Desktop” function from working.
Open your antivirus or firewall settings and check if GitHub Desktop is being blocked.
If you find any restrictions, allow GitHub Desktop as a trusted application.
You can also temporarily disable your antivirus to test if it is causing the issue. If the feature works after disabling it, you will need to adjust the security settings accordingly.
Step 8: Manually Clone the Repository as a Workaround
If none of the above steps work immediately, you can continue your work using a manual method.
Copy the repository URL from GitHub. Open GitHub Desktop and click on “File”, then “Clone Repository”. Paste the URL into the appropriate field and proceed.
While this does not fix the “Open with GitHub Desktop” button directly, it allows you to continue working without interruption while you troubleshoot further.
Faqs
Why is GitHub Desktop not opening from the browser?
This usually happens due to broken protocol handlers, incorrect default app settings, or browser restrictions. Fixing the “x-github-client” association often resolves it.
Does Windows 11 affect GitHub Desktop functionality?
Yes, Windows 11 updates can sometimes reset app associations or introduce compatibility issues, which may affect how GitHub Desktop interacts with browsers.
Can browser extensions cause this issue?
Yes, extensions that block external links or enhance privacy can interfere with GitHub Desktop integration. Disabling them temporarily can help identify the cause.
Is reinstalling GitHub Desktop necessary?
Not always, but it is one of the most effective solutions if the installation is corrupted or incomplete.
What if the problem persists after all fixes?
If none of the steps work, consider checking GitHub Desktop logs or reinstalling your browser. In rare cases, a system-level issue may require deeper troubleshooting.
Summary
The “Open with GitHub Desktop not working” issue on “Windows 11” can seem complex. Still, a few common factors, such as misconfigured protocol handlers, outdated software, or browser restrictions, usually cause it.
By following a structured approach, starting from simple fixes like restarting your system to more advanced steps like resetting app associations, you can resolve the issue effectively.
The key takeaway is to ensure that “GitHub Desktop” is properly installed, updated, and correctly linked to the “x-github-client” protocol. Additionally, checking browser settings and security software plays a crucial role in restoring functionality.